OpenTME
The final OpenTME dataset contains 3,634 slides from 3,424 cases. OpenTME provides more than 4,500 quantitative readouts per slide in CSV format. OpenTME includes thumbnail overlays for tissue quality control, tissue segmentation, and cell…
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The final OpenTME dataset contains 3,634 slides from 3,424 cases. OpenTME provides more than 4,500 quantitative readouts per slide in CSV format. OpenTME includes thumbnail overlays for tissue quality control, tissue segmentation, and cell classification predictions. OpenTME releases pre-computed tumor microenvironment profiles from TCGA slides so researchers can use standardized quantitative features without running the full AI inference pipeline. OpenTME is positioned as a ready-to-use TME characterization resource for a large public cancer cohort.