Tissue Segmentation
The tissue segmentation classes are histologically defined. Only tissue classified as valid proceeds to downstream analysis. Atlas H&E-TME classifies valid tissue into seven categories: carcinoma, epithelial tissue, stroma, necrosis, blood…
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The tissue segmentation classes are histologically defined. Only tissue classified as valid proceeds to downstream analysis. Atlas H&E-TME classifies valid tissue into seven categories: carcinoma, epithelial tissue, stroma, necrosis, blood, vessels, and other. Atlas H&E-TME first segments slides into valid tissue and several invalid or unsuitable region types for quality control. For each tissue type, OpenTME reports area, region count, and morphology descriptors.